Nucleic Acids Research 2012, 40

We constructed a plant NAT database (PlantNATsDB) involving approximately 2 million NAT pairs in 69 plant species. GO annotation and high-throughput small RNA sequencing data currently available were integrated to investigate the biological function of NATs.

BMC Bioinformatics 2011, 12:161

Predicted Rice Interactome Network (PRIN), is the first well annotated protein interaction database for the important model plant Oryza sativa. It has greatly extended the current available protein-protein interaction data of rice with a computational approach, which will certainly provide further insights into rice functional genomics and systems biology.

Nucleic Acids Research 2011, 39:D181-D187

MicroRNAs (miRNAs), one type of small RNAs (sRNAs) in plants, play an essential role in gene regulation. We have constructed a plant miRNA knowledge base (PmiRKB) that provides four major functional modules: 'SNP' module, 'Pri-miR', 'MiR–Tar', and 'Self-reg'.

Bioinformatics 2011, 27:3321-3322

MyBioNet is a web-based application for biological network analysis, which provides user-friendly web interfaces to visualize, edit and merge biological networks. In addition, MyBioNet integrated KEGG metabolic network data from 1366 organisms and allows users to search and navigate interesting networks.