PlncRNADB: Repository of lncRNAs in Plant

A Database for Functional Circular RNAs

PceRBase: Plant Competing Endogenous RNA DataBase

PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks

Manually Curated Database of Experimentally Validated Stress-Responsive Non-coding RNAs in Plants

The Leaf Circular RNA Resources

Arabidopsis thaliana ncRNA coding potential database

A comprehensive compilation of 233 databases/webservers/tools catering to 46 types of ncRNAs.

Comprehensive regulatory database on Oryza Sativa based on genome annotation.

A Comprehensive Resource Database for Caragana korshinskii genomics.

An integrated omics database for soybean germplasm and molecular breeding

iP3Dome: an interactive Plant 3D genome portal

A comprehensive physiological traits database covers multiple significant crops

Plant Stress Gene Database (PSGDb) is a comprehensive database resource of providing important annotation information about stress genes existed in plant.

To tide over COVID-19, the web portal OverCOVID is provided to share bioinformatics resources and information that may contribute to research advances.

Provide users with a platform to analyze blood routine, liver function, urine routine, bone density.

Neurodegenerative Disease Atlas (NDAtlas) is a database for the collective information of the proteins involved in NDs, the related PPIs, and interactive visualizations.

LBD (Lymphoma Biomarker Database) is a manually curated database of literature-supported biomarkers for lymphoma.

Human aging and longevity database

Cell Landscape is a database of single cell RNA sequencing atlas from multiple species. Click “Browse” on the top of the homepage to get an overview of this website.

This is a single cell browser for exploration of gene and transposable element (TE) activities during the endothelial-to-hematopoietic transition (EHT) in human and mouse.

This database exhaustively collects hematopoiesis-related single-cell sequencing data to provide an easily accessible resource for in-depth understanding of the complexity of the origin and development of hematopoietic system

MCA is a public database that uses single-cell RNA sequencing to determine the cell type composition of mouse major organs and build mouse cell Atlas.

HCL is a public databases used single-cell RNA sequencing to determine the cell type composition of major human organs and construct a basic scheme for the human cell landscape.

Using HH-seq to construct a single-cell transcriptome database covering major cancers with high morbidity and mortality in China.

ACA is a publlic database used single-cell RNA sequencing to determine the cell type composition of Axolotl and construct a basic scheme for the Axolotl cell Atlas.

Cell Landscapes for Zebrafish, Drosophila, and Earthworm.

Using CH-ATAC-seq to profile chromatin accessibility landscapes in vertebrates and invertebrates.

Landscape of cell-type-specific genetic variation of gene regulation.

We used single-cell RNA sequencing to determine the cell type composition of Drosophila and construct a basic scheme for the Drosophila cell landscape (DCL).

Web-based resources for Zebrafish Cell Landscape. We used single-cell RNA sequencing to determine the cell type composition of major zebrafish organs and construct a basic scheme for the Zebrafish Cell Landscape (ZCL).

A developmental single-cell Basic Local Alignment Search Tool.The dscBLAST is particularly better at developmental data, and it also performs very well on adult data.

A Earthworm cell landscape (ECL) websit.We used single-cell RNA sequencing to determine the cell type composition of Earthworm and construct a basic scheme for the Earthworm cell landscape (ECL).

An integrated tool to detect circRNAs and interactions with miRNAs in plants

CircPro: an integrated tool for the identification of circRNAs with protein-coding potential

Tool for large-scale identifiction of the new microRNA genes by screening the cleavage signals resided within the genome.

sRNA analysis tool

A web-based toolkit for automatic computation and evaluation of cytometry data.

Based on the clonal evolution theory, we construct a deliberately simplified model to simulate tumor progressionBased on the clonal evolution theory, we construct a deliberately simplified model to simulate tumor progression.

Antigenic variation and evolution analysis of SARS-CoV-2 using self-game sequence optimization

PBSK Browser for systems biology is a web service for reading some standard file formats of biological pathway, including PSI-MI, BioPAX, SBML and KGML.

A platform for genome-wide repeats analysis

A gene composer software that optimizes coding sequences and calculates corresponding RiPS to illustrate their translation rates

MTide: an integrated tool for the identification of miRNA-target interaction in plants

An R package for position effect comparison on short oligonucleotide microarrays

A deep learning frame for predicting subcellular localization information of lncRNA and miRNA

A ternary prediction system for protein-protein interaction using mask multiple parallel convolutional neural networks

A bioinformatic tool which quantifies the sequence repetitiveness based on weighted k-mer coverage

A unified T4SE prediction pipeline based on deep learning model

An R package for constructing gene regulatory networks from microarray data using Bayesian network

An updated version for cloning primer design with significantly expanded utilities

DaTo: The atlas of biological database and Tools

A Predicted Trichoderma reesei Interactome Network

BioPepDB is a searchable database of food-derived bioactive peptides and their related articles, including more than four thousand bioactive peptide entries.

A database of anticancer peptides, searchable by peptide name, uniprot ID, cancer type, origin and sequence.

An Integrative Database for Cell Signal Transduction Classification Alignment

An online programming platform designed for bioinformatics programming enthusiasts and learners.

Collections of various biology databases and tools

A practical SCI IF Search Engine