Plant miRNA research group@Ming Chen' Lab PmiRKB Instructions
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SNP  > Arabidopsis thaliana  > ath-miR166a
Penalty:0.00.51.01.52.02.53.03.54.0≥4.5
miRNA 5'- UCGGACCAGGCUUCAUUCCCC -3' Col-0
UCGGACCAGGCUUCAUUCCCC Bay-0
UCGGACCAGGCUUCAUUCCCC Bur-0
UCGGACCAGGCUUCAUUCCCC Cvi-0
UCGGACCAGGCUUCAUUCCCC Ler-1
UCGGACCAGGCUUCAUUCCCC Sha
UCGGACCAGGCUUCAUUCCCC Tsu-1
Pre-miRNAView SNPs in this pre-miRNA
Target
AT1G30490.1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Tsu-1
Target
AT1G52150.1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Tsu-1
Target
AT1G52150.2
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Tsu-1
Target
AT1G52150.3
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||||||||||||||||||:
CUGGAAUGAAGCCUGGUCCGG
-5'
-3'
Tsu-1
Target
AT2G34710.1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
UUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Tsu-1
Target
AT4G32880.1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Tsu-1
Target
AT5G49250.1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
||| ||||||||:|| ||||:
GGGUAAUGAAGCUUGCUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
||| ||||||||:|| ||||:
GGGUAAUGAAGCUUGCUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
||| ||||||||:|| ||||:
GGGUAAUGAAGCUUGCUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
||| ||||||||:|| ||||:
GGGUAAUGAAGCUUGCUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
||| ||||||||:|| ||||:
GGGUAAUGAAGCUUGCUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
||| ||||||||:|| ||||:
GGGUAAUGAAGCUUGCUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
||| ||||||||:|| ||||:
GGGUAAUGAAGCUUGCUCCGG
-5'
-3'
Tsu-1
Target
AT5G60690.1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Col-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bay-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Bur-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Cvi-0
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Ler-1
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Sha
3'-
5'-
CCCCUUACUUCGGACCAGGCU
  ||:|||||||||||||||:
CUGGGAUGAAGCCUGGUCCGG
-5'
-3'
Tsu-1