Plant miRNA research group@Ming Chen' Lab PmiRKB Instructions
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Plant microRNA Knowledge Base
SNP  > Arabidopsis thaliana  > ath-miR173
Penalty:0.00.51.01.52.02.53.03.54.0≥4.5
miRNA 5'- UUCGCUUGCAGAGAGAAAUCAC -3' Col-0
UUCGCUUGCAGAGAGAAAUCAC Bay-0
UUCGCUUGCAGAGAGAAAUCAC Bur-0
UUCGCUUGCAGAGAGAAAUCAC Cvi-0
UUCGCUUGCAGAGAGAAAUCAC Ler-1
UUCGCUUGCAGAGAGAAAUCAC Sha
UUCGCUUGCAGAGAGAAAUCAC Tsu-1
Pre-miRNAView SNPs in this pre-miRNA
Target
AT1G50055.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||  ||||||||
GUGAUUUUUCUCAACAAGCGAA
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||  ||||||||
GUGAUUUUUCUCAACAAGCGAA
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||  ||||||||
GUGAUUUUUCUCAACAAGCGAA
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||  ||||||||
GUGAUUUUUCUCAACAAGCGAA
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||  ||||||||
GUGAUUUUUCUCAACAAGCGAA
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||  ||||||||
GUGAUUUUUCUCAACAAGCGAA
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||  ||||||||
GUGAUUUUUCUCAACAAGCGAA
-5'
-3'
Tsu-1
Target
AT2G27400.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Tsu-1
Target
AT2G31650.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 || |||| :||||||||||| 
AUGCUUUCAUUCUGCAAGCGAC
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 || |||| :||||||||||| 
AUGCUUUCAUUCUGCAAGCGAC
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 || |||| :||||||||||| 
AUGCUUUCAUUCUGCAAGCGAC
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 || |||| :||||||||||| 
AUGCUUUCAUUCUGCAAGCGAC
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 || |||| :||||||||||| 
AUGCUUUCAUUCUGCAAGCGAC
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 || |||| :||||||||||| 
AUGCUUUCAUUCUGCAAGCGAC
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 || |||| :||||||||||| 
AUGCUUUCAUUCUGCAAGCGAC
-5'
-3'
Tsu-1
Target
AT2G39675.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUACAAGCGAA
-5'
-3'
Tsu-1
Target
AT2G39681.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUCCAAGCGAA
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUCCAAGCGAA
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUCCAAGCGAA
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUCCAAGCGAA
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUCCAAGCGAA
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUCCAAGCGAA
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:||||| ||||||||
GUGAUUUUUCUCUCCAAGCGAA
-5'
-3'
Tsu-1
Target
AT4G07990.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:|:|: |:||||||:
GUGAUUUUUUUUGGUAAGCGAG
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:|:|: |:||||||:
GUGAUUUUUUUUGGUAAGCGAG
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:|:|: |:||||||:
GUGAUUUUUUUUGGUAAGCGAG
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:|:|: |:||||||:
GUGAUUUUUUUUGGUAAGCGAG
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:|:|: |:||||||:
GUGAUUUUUUUUGGUAAGCGAG
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:|:|: |:||||||:
GUGAUUUUUUUUGGUAAGCGAG
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||:|:|: |:||||||:
GUGAUUUUUUUUGGUAAGCGAG
-5'
-3'
Tsu-1
Target
AT5G20200.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 | :|||| |||||:|||||||
UUCGUUUCCCUCUGUAAGCGAA
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 | :|||| |||||:|||||||
UUCGUUUCCCUCUGUAAGCGAA
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 | :|||| |||||:|||||||
UUCGUUUCCCUCUGUAAGCGAA
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 | :|||| |||||:|||||||
UUCGUUUCCCUCUGUAAGCGAA
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 | :|||| |||||:|||||||
UUCGUUUCCCUCUGUAAGCGAA
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 | :|||| |||||:|||||||
UUCGUUUCCCUCUGUAAGCGAA
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 | :|||| |||||:|||||||
UUCGUUUCCCUCUGUAAGCGAA
-5'
-3'
Tsu-1
Target
AT5G33382.1
3'-
5'-
CACUAAAGAGAGACG-UUCGCUU
 ||||||||||:||| |||:|| 
UUGAUUUCUCUUUGCCAAGUGAU
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACG-UUCGCUU
 ||||||||||:||| |||:|| 
UUGAUUUCUCUUUGCCAAGUGAU
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACG-UUCGCUU
 ||||||||||:||| |||:|| 
UUGAUUUCUCUUUGCCAAGUGAU
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACG-UUCGCUU
 ||||||||||:||| |||:|| 
UUGAUUUCUCUUUGCCAAGUGAU
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACG-UUCGCUU
 ||||||||||:||| |||:|| 
UUGAUUUCUCUUUGCCAAGUGAU
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACG-UUCGCUU
 ||||||||||:||| |||:|| 
UUGAUUUCUCUUUGCCAAGUGAU
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACG-UUCGCUU
 ||||||||||:||| |||:|| 
UUGAUUUCUCUUUGCCAAGUGAU
-5'
-3'
Tsu-1
Target
AT5G42060.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||:||||||||||: :||||:
UUGGUUUCUCUCUGUCGGCGAG
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||:||||||||||: :||||:
UUGGUUUCUCUCUGUCGGCGAG
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||:||||||||||: :||||:
UUGGUUUCUCUCUGUCGGCGAG
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||:||||||||||: :||||:
UUGGUUUCUCUCUGUCGGCGAG
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||:||||||||||: :||||:
UUGGUUUCUCUCUGUCGGCGAG
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||:||||||||||: :||||:
UUGGUUUCUCUCUGUCGGCGAG
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||:||||||||||: :||||:
UUGGUUUCUCUCUGUCGGCGAG
-5'
-3'
Tsu-1
Target
AT5G46640.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||  |||||||||||||:|: 
UUGUAUUCUCUCUGCAAGUGGU
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||  |||||||||||||:|: 
UUGUAUUCUCUCUGCAAGUGGU
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||  |||||||||||||:|: 
UUGUAUUCUCUCUGCAAGUGGU
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||  |||||||||||||:|: 
UUGUAUUCUCUCUGCAAGUGGU
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||  |||||||||||||:|: 
UUGUAUUCUCUCUGCAAGUGGU
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||  |||||||||||||:|: 
UUGUAUUCUCUCUGCAAGUGGU
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
 ||  |||||||||||||:|: 
UUGUAUUCUCUCUGCAAGUGGU
-5'
-3'
Tsu-1
Target
AT5G65640.1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Tsu-1
Target
AT5G65640.2
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Col-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Bay-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Bur-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Cvi-0
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Ler-1
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Sha
3'-
5'-
CACUAAAGAGAGACGUUCGCUU
|||||||||||:||||:||   
GUGAUUUCUCUUUGCAGGCUUC
-5'
-3'
Tsu-1