CellAnalyst: Delivering the Single Cell Repertoire From Bioinformatics Analysts to Experimental Biologists
The embedding of cells colored by meta fields.
The embedding of cells colored by meta fields.
The cell proportion and quality control across meta fields.
The cell type dot plot and marker list.
The embedding and violin plot of gene expression.
The GO and KEGG enrichment of cell type markers.
Single cell data analyzed by bioinformaticians are typically stored in an invisible format as R or Python objects. CellAnalyst visualizes such single-cell data in an interactive format, enabling real time exploration by experimental biologists. Click to explore example!
Updates
- Aug 10, 2025: Released CellAnalyst v1.0.
- May 10, 2025: Added Marker List; integrated dot plot into the marker gene table per feedback.
- Nov 12, 2024: Added Split View, enabling comparative analysis of cellular expression across metadata fields.
- Aug 7, 2024: Developed primary views: UMAP, cell quality, dot plot, gene expression, and functional enrichment.
- Jan 5, 2024: Launched CellAnalyst; concept derived from discussions with experimental collaborators.