Installation

We offer both desktop and server versions of CellAnalyst. The desktop version facilitates local ingestion of single-cell datasets, eliminating the need for remote data transfer. In contrast, the server version enables the development of web applications for interactive visualization and analysis, allowing broader collaborative access to your single-cell data.

For Desktop User

CellAnalyst desktop processes and visualizes single-cell data locally—no network needed, ensuring data security. Built with php-desktop, it's portable and scalable for both Windows and Mac users. Download the latest version from the provided link or GitHub.

CellAnalyst Desktop Version 1.0

After downloading, extract the compressed file; the software file structure is shown below. Double-click the .exe file to launch the CellAnalyst desktop application. Please refer to #How to Use for instructions on detailed usages.

For Web Server

CellAnalyst web version is developed with a PHP backend and a responsive BootStrap frontend. Download the package and extract its contents into your designated web server directory (e.g., /var/www). Datasets may be ingested via the integrated Browse interface, or manually by creating directories and transferring files.

CellAnalyst Web-Server Version 1.0

After generating the required files for CellAbalyst (see #Set Up Your Own Project for details), you can create species and project directories in scdata/, and then move all files into the project directory. The CellAnalyst Web Server will automatically detect the projects under scdata/ and activate it on web.