2011-04-06

• New release of miRBase:
  From release 15:
  Arabidopsis thaliana [TAIR9] (199)
  Oryza sativa [TIGR6.0] (447)
  To release 16:
  Arabidopsis thaliana [TAIR9] (213)
  Oryza sativa [MSU6.0] (462)
  References:
  Griffiths-Jones,S., Saini,H.K., van Dongen,S. and Enright,A.J. (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res., 36, D154-158.

2010-06-05

• Addition of target site position information for each target transcript in the "MiR–Tar" module.

2010-06-04

• Addition of annotations of miRNA target genes in the "SNP" and the "MiR—Tar" modules.
  Addition of free energy value for each pre-miRNA in the "SNP" module.

2010-05-05

• PmiRKB (the second version) is publicly available on the Internet.

2010-04-26

• New release of miRBase:
  From release 14:
  Arabidopsis thaliana [TAIR9] (190)
  Oryza sativa [TIGR6.0] (414)
  To release 15:
  Arabidopsis thaliana [TAIR9] (199)
  Oryza sativa [MSU6.0] (447)
  References:
  Griffiths-Jones,S., Saini,H.K., van Dongen,S. and Enright,A.J. (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res., 36, D154-158.

2010-04-23

• Addition of rice SNP data of 20 rice subspecies released by OryzaSNP Project (ftp://ftp.plantbiology.msu.edu/pub/data/Oryza_SNP/
  References:
  McNally,K.L., Childs,K.L., Bohnert,R., Davidson,R.M., Zhao,K., Ulat,V.J., Zeller,G., Clark,R.M., Hoen,D.R., Bureau,T.E. et al. (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc. Natl. Acad. Sci. USA., 106, 12273-12278.
  McNally,K.L., Bruskiewich,R., Mackill,D., Buell,C.R., Leach,J.E. and Leung,H. (2006) Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes. Plant Physiol., 141, 26-31.

2010-04-14

• Addition of rice PARE data reported by Sunkar’s group (2010).
  References:
  Li,Y.F., Zheng,Y., Addo-Quaye,C., Zhang,L., Saini,A., Jagadeeswaran,G., Axtell,M.J., Zhang,W. and Sunkar, R. (2010) Transcriptome-wide identification of microRNA targets in rice. Plant J., 10.1111/j.1365-313X.2010.04187.x

2010-04-05

• PmiRKB (the first version) construction completed.