RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g28450.1 View Network Show in Genome Browser |
| Other Names | Os01g0382000 |
| Description | SCP-like extracellular protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 15934491-15935319 Nucleotide Length: 495 |
| Protein-coding | LOC_Os01g28450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g23740 LOC_Os01g27630 LOC_Os01g27210 LOC_Os01g27390 LOC_Os01g25100 LOC_Os01g27360 LOC_Os01g27340 LOC_Os01g27260 LOC_Os01g27380 LOC_Os01g27480 LOC_Os01g24470 More.. |
| Downstream Genes | LOC_Os04g55410 LOC_Os12g15400 LOC_Os08g39694 LOC_Os07g26870 LOC_Os03g14400 LOC_Os10g05660 LOC_Os09g36560 LOC_Os08g43510 LOC_Os05g06440 LOC_Os03g53800 LOC_Os09g20090 More.. |
| Reference | |
|---|---|
| PubMed | 18247056 11097833 21715672 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g28450.1 |
| Rice Genome Annotation | LOC_Os01g28450.1 |
| Ricechip | LOC_Os01g28450.1 |
| KEGG | osa:4325422 dosa:Os01t0382000-01 |
| Entrez-Gene | 4325422 |