RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g40610.1 View Network Show in Genome Browser |
| Other Names | Os01g0588700 |
| Description | coiled-coil domain-containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 22931927-22937272 Nucleotide Length: 993 |
| Protein-coding | LOC_Os01g40610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g27630 LOC_Os01g27390 LOC_Os01g27360 LOC_Os01g27340 LOC_Os01g27260 LOC_Os01g27380 LOC_Os01g27210 LOC_Os01g27480 LOC_Os01g25100 |
| Downstream Genes | LOC_Os03g21990 LOC_Os07g44970 LOC_Os04g28090 LOC_Os01g55830 LOC_Os06g12910 LOC_Os03g27970 LOC_Os02g52250 LOC_Os12g15420 LOC_Os05g05620 LOC_Os01g49270 LOC_Os12g42140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g40610.1 |
| Rice Genome Annotation | LOC_Os01g40610.1 |
| Ricechip | LOC_Os01g40610.1 |
| KEGG | osa:4324443 dosa:Os01t0588700-01 |
| Entrez-Gene | 4324443 |