RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g47850.1 View Network Show in Genome Browser |
| Other Names | Os02g0708100 |
| Description | class I glutamine amidotransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 29270056-29274644 Nucleotide Length: 1422 |
| Protein-coding | LOC_Os02g47850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g38970 LOC_Os01g43020 LOC_Os02g24020 LOC_Os01g39260 LOC_Os01g39250 LOC_Os01g43150 LOC_Os01g40820 LOC_Os01g50700 LOC_Os01g45450 LOC_Os02g20394 LOC_Os01g59340 More.. |
| Downstream Genes | LOC_Os06g48620 LOC_Os03g15120 LOC_Os03g02690 LOC_Os03g14120 LOC_Os06g49140 LOC_Os05g49230 LOC_Os03g60750 LOC_Os09g27270 LOC_Os10g36860 LOC_Os03g02570 LOC_Os09g32050 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn00400 rn01110 rn00240 rn00250 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 PWY-5043 TRPSYN-PWY PWY-6660 PWY-6661 PWY-5958 ARGSYNBSUB-PWY PWY0-162 ARGSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g47850.1 |
| Rice Genome Annotation | LOC_Os02g47850.1 |
| Ricechip | LOC_Os02g47850.1 |
| KEGG | osa:4330474 dosa:Os02t0708100-02 |
| Entrez-Gene | 4330474 |