RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
---|---|
Locus Name | LOC_Os03g08440.1 View Network Show in Genome Browser |
Other Names | Os03g0182600 |
Description | ribosomal protein S2, putative, expressed |
Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 4336661-4338948 Nucleotide Length: 918 |
Protein-coding | LOC_Os03g08440 |
Gene Ontology Classification | ||||
---|---|---|---|---|
GO | Name | Type | Code | |
GO:0016043 | cellular component organization | Biological Process | IEA | |
GO:0009987 | cellular process | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
GO:0006950 | response to stress | Biological Process | IEA | |
GO:0006412 | translation | Biological Process | IEA | |
GO:0006810 | transport | Biological Process | IEA | |
GO:0005198 | structural molecule activity | Molecular Function | IEA | |
GO:0005575 | cellular_component | Cellular Component | IEA | |
GO:0005737 | cytoplasm | Cellular Component | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0005622 | intracellular | Cellular Component | IEA | |
GO:0016020 | membrane | Cellular Component | IEA | |
GO:0005634 | nucleus | Cellular Component | IEA | |
GO:0005886 | plasma membrane | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA | |
GO:0005840 | ribosome | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
---|---|
Upstream Genes | LOC_Os01g49290 LOC_Os02g27760 LOC_Os02g34460 LOC_Os02g01560 LOC_Os01g25610 LOC_Os02g01332 LOC_Os01g67134 LOC_Os01g62350 LOC_Os01g19840 LOC_Os03g04750 LOC_Os01g64090 More.. |
Downstream Genes | LOC_Os03g37970 LOC_Os06g02510 LOC_Os11g04070 LOC_Os08g03640 LOC_Os03g58204 LOC_Os03g22180 LOC_Os12g03880 LOC_Os07g47780 LOC_Os12g38000 LOC_Os07g01870 LOC_Os11g29190 More.. |
Database Links | |
---|---|
Gramene | LOC_Os03g08440.1 |
Rice Genome Annotation | LOC_Os03g08440.1 |
Ricechip | LOC_Os03g08440.1 |
KEGG | osa:9272225 dosa:Os03t0182600-02 |
Entrez-Gene | 9272225 |