RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g11120.1 View Network Show in Genome Browser |
| Other Names | Os03g0209600 |
| Description | methionyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 5721104-5728615 Nucleotide Length: 1809 |
| Protein-coding | LOC_Os03g11120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g03020 LOC_Os03g02100 LOC_Os02g53770 LOC_Os03g04960 LOC_Os02g03260 LOC_Os02g52390 LOC_Os01g55870 LOC_Os01g54870 LOC_Os02g14059 LOC_Os01g54020 LOC_Os01g31610 More.. |
| Downstream Genes | LOC_Os09g38420 LOC_Os07g06440 LOC_Os07g06410 LOC_Os04g48820 LOC_Os03g48850 LOC_Os12g02380 LOC_Os06g43760 LOC_Os11g02450 LOC_Os09g32650 LOC_Os03g44100 LOC_Os06g01400 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 rn00450 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g11120.1 |
| Rice Genome Annotation | LOC_Os03g11120.1 |
| Ricechip | LOC_Os03g11120.1 |
| KEGG | osa:4332018 dosa:Os03t0209600-01 |
| Entrez-Gene | 4332018 |