RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g14990.1 View Network Show in Genome Browser |
| Other Names | Os03g0254800 |
| Description | chorismate synthase 2, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 8177749-8181743 Nucleotide Length: 1317 |
| Protein-coding | LOC_Os03g14990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g19840 LOC_Os02g27760 LOC_Os01g62350 LOC_Os02g08180 LOC_Os02g45820 LOC_Os01g49290 LOC_Os02g05330 LOC_Os02g54470 LOC_Os02g01560 LOC_Os01g25610 LOC_Os01g71230 More.. |
| Downstream Genes | LOC_Os05g28750 LOC_Os04g37600 LOC_Os07g12110 LOC_Os07g46750 LOC_Os05g38520 LOC_Os04g51630 LOC_Os07g10830 LOC_Os06g48750 LOC_Os07g42960 LOC_Os07g08330 LOC_Os07g42300 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | ARO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g14990.1 |
| Rice Genome Annotation | LOC_Os03g14990.1 |
| Ricechip | LOC_Os03g14990.1 |
| KEGG | osa:4332286 dosa:Os03t0254800-01 |
| Entrez-Gene | 4332286 |