RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g27350.1 View Network Show in Genome Browser |
| Other Names | Os03g0391000 |
| Description | cysteine protease ATG4, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 15661851-15665670 Nucleotide Length: 1518 |
| Protein-coding | LOC_Os03g27350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59150 LOC_Os01g18050 LOC_Os02g07060 LOC_Os03g01530 LOC_Os03g11970 LOC_Os01g49190 LOC_Os01g16650 LOC_Os03g18870 LOC_Os01g36920 |
| Downstream Genes | LOC_Os04g53240 LOC_Os07g32800 LOC_Os08g09240 LOC_Os11g14220 LOC_Os03g51600 LOC_Os03g45920 LOC_Os07g38730 LOC_Os03g56810 LOC_Os05g34170 LOC_Os06g46000 LOC_Os07g10660 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g27350.1 |
| Rice Genome Annotation | LOC_Os03g27350.1 |
| Ricechip | LOC_Os03g27350.1 |
| KEGG | osa:4333022 dosa:Os03t0391000-01 |
| Entrez-Gene | 4333022 |