RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g40110.1 View Network Show in Genome Browser |
| Other Names | Os03g0598200 |
| Description | nop14-like family protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 22285683-22292562 Nucleotide Length: 2790 |
| Protein-coding | LOC_Os03g40110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g69970 LOC_Os01g48210 LOC_Os03g22350 LOC_Os01g08770 LOC_Os02g26850 LOC_Os02g50370 LOC_Os03g18570 LOC_Os03g21530 LOC_Os01g34200 LOC_Os03g18580 LOC_Os03g22740 More.. |
| Downstream Genes | LOC_Os04g50660 LOC_Os12g31840 LOC_Os05g01990 LOC_Os04g43140 LOC_Os07g33340 LOC_Os12g04010 LOC_Os11g04200 LOC_Os03g56800 LOC_Os07g10350 LOC_Os04g58830 LOC_Os10g42320 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 osa-miR1882e-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g40110.1 |
| Rice Genome Annotation | LOC_Os03g40110.1 |
| Ricechip | LOC_Os03g40110.1 |
| KEGG | osa:4333384 dosa:Os03t0598200-01 |
| Entrez-Gene | 4333384 |