RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os03g42770.1 View Network Show in Genome Browser |
Other Names | Os03g0625900 |
Description | expressed protein |
Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 23817641-23824229 Nucleotide Length: 1536 |
Protein-coding | LOC_Os03g42770 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0016043 | cellular component organization | Biological Process | IEA | |
GO:0009987 | cellular process | Biological Process | IEA | |
GO:0009790 | embryo development | Biological Process | IEA | |
GO:0007275 | multicellular organismal development | Biological Process | IEA | |
GO:0009875 | pollen-pistil interaction | Biological Process | IEA | |
GO:0009791 | post-embryonic development | Biological Process | IEA | |
GO:0000003 | reproduction | Biological Process | IEA | |
GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
GO:0000166 | nucleotide binding | Molecular Function | IEA | |
GO:0005622 | intracellular | Cellular Component | IEA | |
GO:0005730 | nucleolus | Cellular Component | IEA | |
GO:0005634 | nucleus | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os02g50370 LOC_Os03g22740 LOC_Os03g22730 LOC_Os02g25060 LOC_Os03g22320 LOC_Os03g22880 LOC_Os03g22350 LOC_Os01g04260 LOC_Os01g13730 LOC_Os02g49270 LOC_Os01g40250 More.. |
Downstream Genes | LOC_Os11g07500 LOC_Os09g36770 LOC_Os04g55220 LOC_Os06g03780 LOC_Os12g04010 LOC_Os08g05880 LOC_Os07g12320 LOC_Os10g35290 LOC_Os11g04200 LOC_Os03g61790 LOC_Os10g10434 More.. |
miRNA Regulations | |
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miRNAs | osa-miR2919 |
Database Links | |
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Gramene | LOC_Os03g42770.1 |
Rice Genome Annotation | LOC_Os03g42770.1 |
Ricechip | LOC_Os03g42770.1 |
KEGG | osa:4333495 dosa:Os03t0625900-01 |
Entrez-Gene | 4333495 |