RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g49420.1 View Network Show in Genome Browser |
| Other Names | Os03g0701000 |
| Description | HEAT repeat family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 28128677-28137136 Nucleotide Length: 3345 |
| Protein-coding | LOC_Os03g49420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g25370 LOC_Os01g62350 LOC_Os01g14950 LOC_Os01g19840 LOC_Os01g64640 LOC_Os01g67134 LOC_Os03g18350 LOC_Os03g42050 LOC_Os02g27470 LOC_Os03g02780 LOC_Os02g45940 More.. |
| Downstream Genes | LOC_Os05g06350 LOC_Os05g28510 LOC_Os05g38520 LOC_Os05g46270 LOC_Os04g59494 LOC_Os05g28750 LOC_Os04g26841 LOC_Os04g42270 LOC_Os11g05730 LOC_Os06g06510 LOC_Os06g06460 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2873b osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g49420.1 |
| Rice Genome Annotation | LOC_Os03g49420.1 |
| Ricechip | LOC_Os03g49420.1 |
| KEGG | osa:4333825 dosa:Os03t0701000-01 |
| Entrez-Gene | 4333825 |