RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g51220.1 View Network Show in Genome Browser |
| Other Names | Os03g0722100 |
| Description | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 29296088-29302092 Nucleotide Length: 2745 |
| Protein-coding | LOC_Os03g51220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g51880 LOC_Os02g40810 LOC_Os02g10060 LOC_Os03g10570 LOC_Os02g04490 LOC_Os02g02290 LOC_Os01g47600 LOC_Os03g02780 LOC_Os02g45940 LOC_Os02g35100 LOC_Os02g06592 More.. |
| Downstream Genes | LOC_Os08g04780 LOC_Os04g47270 LOC_Os10g38850 LOC_Os09g21770 LOC_Os09g07300 LOC_Os08g32620 LOC_Os07g08880 LOC_Os03g58530 LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2093-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g51220.1 |
| Rice Genome Annotation | LOC_Os03g51220.1 |
| Ricechip | LOC_Os03g51220.1 |
| KEGG | osa:4333941 dosa:Os03t0722100-01 |
| Entrez-Gene | 4333941 |