RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g58204.1 View Network Show in Genome Browser |
| Other Names | Os03g0796501 |
| Description | ribosomal protein L4, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33143597-33144986 Nucleotide Length: 1215 |
| Protein-coding | LOC_Os03g58204 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os01g49290 LOC_Os03g08440 LOC_Os03g22180 LOC_Os01g67134 LOC_Os01g49190 LOC_Os01g54870 LOC_Os03g37970 LOC_Os01g47660 More.. |
| Downstream Genes | LOC_Os11g04070 LOC_Os07g47780 LOC_Os08g03640 LOC_Os12g03880 LOC_Os06g02510 LOC_Os07g10660 LOC_Os07g42450 LOC_Os05g06310 LOC_Os05g49030 LOC_Os04g42380 LOC_Os05g47890 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3982-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g58204.1 |
| Rice Genome Annotation | LOC_Os03g58204.1 |
| Ricechip | LOC_Os03g58204.1 |
| KEGG | osa:9272589 dosa:Os03t0796501-00 |
| Entrez-Gene | 9272589 |