RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g58700.1 View Network Show in Genome Browser |
| Other Names | Os03g0801600 |
| Description | vacuolar protein sorting-associated protein 35, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33424906-33433088 Nucleotide Length: 2382 |
| Protein-coding | LOC_Os03g58700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g16550 LOC_Os01g64280 LOC_Os01g29409 LOC_Os03g44200 LOC_Os01g52720 LOC_Os01g48920 LOC_Os03g15290 LOC_Os02g47410 LOC_Os02g05330 LOC_Os02g08260 LOC_Os03g18550 More.. |
| Downstream Genes | LOC_Os12g31640 LOC_Os11g41130 LOC_Os04g30430 LOC_Os08g02354 LOC_Os06g48750 LOC_Os06g04600 LOC_Os12g01390 LOC_Os11g01380 LOC_Os08g15040 LOC_Os07g07260 LOC_Os05g32580 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2930 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g58700.1 |
| Rice Genome Annotation | LOC_Os03g58700.1 |
| Ricechip | LOC_Os03g58700.1 |
| KEGG | osa:4334459 dosa:Os03t0801600-01 |
| Entrez-Gene | 4334459 |