RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g60580.1 View Network Show in Genome Browser |
| Other Names | Os03g0820500 |
| Description | actin-depolymerizing factor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 34430584-34431200 Nucleotide Length: 453 |
| Protein-coding | LOC_Os03g60580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g43890 LOC_Os02g53420 LOC_Os03g22810 LOC_Os02g07490 LOC_Os03g02260 LOC_Os03g16920 LOC_Os01g73310 LOC_Os03g56280 LOC_Os01g62290 LOC_Os03g16860 LOC_Os03g51250 More.. |
| Downstream Genes | LOC_Os05g46480 LOC_Os09g02180 LOC_Os12g43630 LOC_Os11g04070 LOC_Os08g03640 LOC_Os12g03880 LOC_Os06g36700 LOC_Os06g12530 LOC_Os10g23090 LOC_Os07g46990 LOC_Os04g58990 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g60580.1 |
| Rice Genome Annotation | LOC_Os03g60580.1 |
| Ricechip | LOC_Os03g60580.1 |
| KEGG | osa:4334594 dosa:Os03t0820500-01 |
| Entrez-Gene | 4334594 |