RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g62200.1 View Network Show in Genome Browser |
| Other Names | Os03g0838400 |
| Description | ammonium transporter protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 35238255-35241976 Nucleotide Length: 1440 |
| Protein-coding | LOC_Os03g62200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g27630 LOC_Os03g45170 LOC_Os02g04810 LOC_Os02g33030 LOC_Os02g29140 LOC_Os02g29160 LOC_Os01g27390 LOC_Os01g49120 LOC_Os01g31980 LOC_Os01g07640 LOC_Os03g47650 More.. |
| Downstream Genes | LOC_Os05g01310 LOC_Os10g30090 LOC_Os08g32840 LOC_Os08g32750 LOC_Os04g30490 LOC_Os03g63520 LOC_Os10g11354 LOC_Os08g32780 LOC_Os06g29844 LOC_Os12g42850 LOC_Os06g29994 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g62200.1 |
| Rice Genome Annotation | LOC_Os03g62200.1 |
| Ricechip | LOC_Os03g62200.1 |
| KEGG | osa:4334717 dosa:Os03t0838400-01 |
| Entrez-Gene | 4334717 |