RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g02730.1 View Network Show in Genome Browser |
| Other Names | Os04g0117600 |
| Description | tRNA-dihydrouridine synthase 3-like, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 1046902-1054004 Nucleotide Length: 2091 |
| Protein-coding | LOC_Os04g02730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22350 LOC_Os02g49270 LOC_Os01g61830 LOC_Os02g19804 LOC_Os03g05720 LOC_Os03g15120 LOC_Os01g68310 LOC_Os01g69970 LOC_Os03g02420 LOC_Os01g33050 LOC_Os01g08770 More.. |
| Downstream Genes | LOC_Os09g19560 LOC_Os04g56350 LOC_Os04g20990 LOC_Os09g37860 LOC_Os06g06730 LOC_Os08g10570 LOC_Os12g42370 LOC_Os06g49870 LOC_Os11g07500 LOC_Os07g30980 LOC_Os09g18320 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-5098 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g02730.1 |
| Rice Genome Annotation | LOC_Os04g02730.1 |
| Ricechip | LOC_Os04g02730.1 |
| KEGG | osa:4334955 dosa:Os04t0117600-01 |
| Entrez-Gene | 4334955 |