RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g10650.1 View Network Show in Genome Browser |
| Other Names | Os04g0185100 |
| Description | CDT1A - Putative DNA replication initiation protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 5785578-5788514 Nucleotide Length: 1767 |
| Protein-coding | LOC_Os04g10650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g63710 LOC_Os03g02680 LOC_Os03g01850 LOC_Os03g08640 LOC_Os02g55410 LOC_Os01g36390 LOC_Os02g03060 LOC_Os03g63430 LOC_Os03g03150 LOC_Os03g13970 LOC_Os03g13170 More.. |
| Downstream Genes | LOC_Os11g29380 LOC_Os05g14590 LOC_Os06g08790 LOC_Os12g37400 LOC_Os07g43540 LOC_Os12g39210 LOC_Os12g31810 LOC_Os04g28090 LOC_Os05g39850 LOC_Os05g38850 LOC_Os09g39500 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5792 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g10650.1 |
| Rice Genome Annotation | LOC_Os04g10650.1 |
| Ricechip | LOC_Os04g10650.1 |
| KEGG | osa:4335111 dosa:Os04t0185100-01 |
| Entrez-Gene | 4335111 |