RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g33190.1 View Network Show in Genome Browser |
| Other Names | Os04g0404800 |
| Description | AMP-binding enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20077759-20083076 Nucleotide Length: 2244 |
| Protein-coding | LOC_Os04g33190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01920 LOC_Os03g12900 LOC_Os01g11300 LOC_Os03g12910 LOC_Os02g04710 LOC_Os02g32120 LOC_Os01g11340 LOC_Os01g11270 LOC_Os01g11280 LOC_Os03g55150 LOC_Os03g29170 More.. |
| Downstream Genes | LOC_Os09g07830 LOC_Os08g40180 LOC_Os09g31970 LOC_Os08g43170 LOC_Os05g25310 LOC_Os08g38720 LOC_Os07g40580 LOC_Os09g34960 LOC_Os12g32240 LOC_Os07g02210 LOC_Os05g34770 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00680 rn00720 rn01100 rn01110 rn01120 rn00620 rn00640 |
| Metacyc Pathways | GLUDEG-II-PWY PWY66-21 PWY66-162 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g33190.1 |
| Rice Genome Annotation | LOC_Os04g33190.1 |
| Ricechip | LOC_Os04g33190.1 |
| KEGG | osa:4335745 dosa:Os04t0404800-01 |
| Entrez-Gene | 4335745 |