RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39420.1 View Network Show in Genome Browser |
| Other Names | Os04g0469500 |
| Description | 6-phosphofructokinase 2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23463357-23465733 Nucleotide Length: 801 |
| Protein-coding | LOC_Os04g39420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g53680 LOC_Os01g09570 LOC_Os01g67860 LOC_Os02g05340 LOC_Os01g16960 LOC_Os03g56460 LOC_Os02g05330 LOC_Os03g20880 LOC_Os01g05840 LOC_Os03g51600 LOC_Os04g02820 More.. |
| Downstream Genes | LOC_Os11g07930 LOC_Os11g07922 LOC_Os05g44922 LOC_Os12g03720 LOC_Os06g04280 LOC_Os11g03900 LOC_Os06g05860 LOC_Os05g10650 LOC_Os08g34050 LOC_Os06g40640 LOC_Os12g05110 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00052 rn01100 rn00010 rn00030 rn00051 rn00680 rn01110 rn01120 |
| Metacyc Pathways | ANAEROFRUCAT-PWY PWY-1042 PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39420.1 |
| Rice Genome Annotation | LOC_Os04g39420.1 |
| Ricechip | LOC_Os04g39420.1 |
| KEGG | osa:4336113 dosa:Os04t0469500-01 |
| Entrez-Gene | 4336113 |