RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39444.1 View Network Show in Genome Browser |
| Other Names | |
| Description | LSM domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23497156-23499370 Nucleotide Length: 345 |
| Protein-coding | LOC_Os04g39444 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g13760 LOC_Os02g01250 LOC_Os02g01740 LOC_Os02g03440 LOC_Os03g29740 LOC_Os03g53220 LOC_Os02g58090 LOC_Os04g36810 LOC_Os01g64690 LOC_Os02g13990 LOC_Os02g30624 More.. |
| Downstream Genes | LOC_Os05g24970 LOC_Os11g43620 LOC_Os08g05530 LOC_Os07g07220 LOC_Os10g35550 LOC_Os05g07050 LOC_Os05g51650 LOC_Os10g02630 LOC_Os05g32310 LOC_Os10g34380 LOC_Os07g33330 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39444.1 |
| Rice Genome Annotation | LOC_Os04g39444.1 |
| Ricechip | LOC_Os04g39444.1 |