RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39700.1 View Network Show in Genome Browser |
| Other Names | Os04g0473400 |
| Description | 60S ribosomal protein L6, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23660833-23663041 Nucleotide Length: 669 |
| Protein-coding | LOC_Os04g39700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18570 LOC_Os01g19840 LOC_Os03g18580 LOC_Os03g27260 LOC_Os01g62350 LOC_Os03g21940 LOC_Os03g04750 LOC_Os02g30050 LOC_Os01g54870 LOC_Os03g38000 LOC_Os01g59990 More.. |
| Downstream Genes | LOC_Os07g42950 LOC_Os05g30530 LOC_Os05g27940 LOC_Os05g28750 LOC_Os05g40820 LOC_Os05g38520 LOC_Os10g32820 LOC_Os04g42380 LOC_Os09g08430 LOC_Os12g38000 LOC_Os07g12250 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39700.1 |
| Rice Genome Annotation | LOC_Os04g39700.1 |
| Ricechip | LOC_Os04g39700.1 |
| KEGG | osa:4336140 dosa:Os04t0473400-01 |
| Entrez-Gene | 4336140 |