RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g41040.1 View Network Show in Genome Browser |
| Other Names | Os04g0487300 |
| Description | DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24352391-24355421 Nucleotide Length: 618 |
| Protein-coding | LOC_Os04g41040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44484 LOC_Os03g38960 LOC_Os03g28960 LOC_Os02g02510 LOC_Os03g18410 LOC_Os03g01230 LOC_Os01g56550 LOC_Os01g73430 LOC_Os01g66580 LOC_Os02g05880 LOC_Os02g49180 More.. |
| Downstream Genes | LOC_Os07g27930 LOC_Os05g05860 LOC_Os09g02284 LOC_Os04g41490 LOC_Os10g35290 LOC_Os11g08940 LOC_Os06g48230 LOC_Os07g07610 LOC_Os10g10990 LOC_Os04g54840 LOC_Os12g09280 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g41040.1 |
| Rice Genome Annotation | LOC_Os04g41040.1 |
| Ricechip | LOC_Os04g41040.1 |
| KEGG | osa:9270850 dosa:Os04t0487300-01 |
| Entrez-Gene | 9270850 |