RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48370.1 View Network Show in Genome Browser |
| Other Names | Os04g0572600 |
| Description | RNA polymerase IV subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28840501-28846888 Nucleotide Length: 1734 |
| Protein-coding | LOC_Os04g48370 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007267 | cell-cell signaling | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05880 LOC_Os04g41490 LOC_Os01g73430 LOC_Os03g44484 LOC_Os03g28960 LOC_Os04g41040 LOC_Os01g59140 LOC_Os01g59730 LOC_Os01g16890 LOC_Os04g34720 LOC_Os03g60400 More.. |
| Downstream Genes | LOC_Os05g05860 LOC_Os12g01710 LOC_Os09g38268 LOC_Os04g54840 LOC_Os08g07480 LOC_Os10g35290 LOC_Os06g06420 LOC_Os11g04730 LOC_Os12g04510 LOC_Os05g41110 LOC_Os10g20990 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48370.1 |
| Rice Genome Annotation | LOC_Os04g48370.1 |
| Ricechip | LOC_Os04g48370.1 |
| KEGG | osa:4336722 dosa:Os04t0572600-01 |
| Entrez-Gene | 4336722 |