RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os04g49420.1 View Network Show in Genome Browser |
Other Names | Os04g0583600,Os04g0583550 |
Description | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 29487977-29489558 Nucleotide Length: 312 |
Protein-coding | LOC_Os04g49420 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0016043 | cellular component organization | Biological Process | IEA | |
GO:0016043 | cellular component organization | Biological Process | IEA | |
GO:0006259 | DNA metabolic process | Biological Process | IEA | |
GO:0006259 | DNA metabolic process | Biological Process | IEA | |
GO:0003677 | DNA binding | Molecular Function | IEA | |
GO:0003677 | DNA binding | Molecular Function | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0005575 | cellular_component | Cellular Component | IEA | |
GO:0005575 | cellular_component | Cellular Component | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0016020 | membrane | Cellular Component | IEA | |
GO:0016020 | membrane | Cellular Component | IEA | |
GO:0005886 | plasma membrane | Cellular Component | IEA | |
GO:0005886 | plasma membrane | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA | |
GO:0005773 | vacuole | Cellular Component | IEA | |
GO:0005773 | vacuole | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os04g34240 LOC_Os01g64640 LOC_Os01g62230 LOC_Os03g27310 LOC_Os03g51200 LOC_Os01g05630 LOC_Os01g05970 LOC_Os01g05610 LOC_Os01g05900 LOC_Os01g06010 LOC_Os03g17084 More.. |
Downstream Genes | LOC_Os11g05730 LOC_Os06g06510 LOC_Os06g06460 LOC_Os05g36280 LOC_Os08g33100 LOC_Os12g34510 LOC_Os07g36140 LOC_Os06g04030 LOC_Os12g25120 LOC_Os07g36130 LOC_Os08g38300 More.. |
miRNA Regulations | |
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miRNAs | osa-miR2878-3p |
Database Links | |
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Gramene | LOC_Os04g49420.1 |
Rice Genome Annotation | LOC_Os04g49420.1 |
Ricechip | LOC_Os04g49420.1 |
KEGG | osa:4336777 dosa:Os04t0583600-01 |
Entrez-Gene | 4336777 |