RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52400.1 View Network Show in Genome Browser |
| Other Names | Os04g0614000 |
| Description | oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31139174-31141646 Nucleotide Length: 900 |
| Protein-coding | LOC_Os04g52400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g40730 LOC_Os02g38440 LOC_Os01g73990 LOC_Os01g05840 LOC_Os01g27630 LOC_Os01g27210 LOC_Os03g02460 LOC_Os02g39490 LOC_Os04g44950 LOC_Os04g22380 LOC_Os04g22390 More.. |
| Downstream Genes | LOC_Os12g41590 LOC_Os11g07930 LOC_Os11g07922 LOC_Os07g32400 LOC_Os11g16410 LOC_Os11g24484 LOC_Os09g39670 LOC_Os10g40030 LOC_Os10g40020 LOC_Os05g01820 LOC_Os06g51150 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 |
| Metacyc Pathways | PWY-5076 PWY-5079 PWY-5078 PWY-5082 PWY-5057 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52400.1 |
| Rice Genome Annotation | LOC_Os04g52400.1 |
| Ricechip | LOC_Os04g52400.1 |
| KEGG | osa:4336980 dosa:Os04t0614000-01 |
| Entrez-Gene | 4336980 |