RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53240.1 View Network Show in Genome Browser |
| Other Names | Os04g0624000 |
| Description | autophagy-related protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31716368-31719173 Nucleotide Length: 360 |
| Protein-coding | LOC_Os04g53240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g74520 LOC_Os01g16670 LOC_Os03g27350 LOC_Os01g12800 LOC_Os03g51080 LOC_Os01g42850 LOC_Os03g49180 LOC_Os04g01600 LOC_Os03g13300 LOC_Os01g40280 LOC_Os02g03100 More.. |
| Downstream Genes | LOC_Os07g23200 LOC_Os10g31000 LOC_Os04g58560 LOC_Os06g27650 LOC_Os08g36320 LOC_Os08g18110 LOC_Os08g20270 LOC_Os05g44310 LOC_Os12g30540 LOC_Os10g11140 LOC_Os06g10340 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53240.1 |
| Rice Genome Annotation | LOC_Os04g53240.1 |
| Ricechip | LOC_Os04g53240.1 |
| KEGG | osa:4337052 dosa:Os04t0624000-01 |
| Entrez-Gene | 4337052 |