RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53770.1 View Network Show in Genome Browser |
| Other Names | Os04g0630000 |
| Description | SDA1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32043533-32048708 Nucleotide Length: 2514 |
| Protein-coding | LOC_Os04g53770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g57280 LOC_Os03g22350 LOC_Os03g22320 LOC_Os02g49270 LOC_Os03g02420 LOC_Os03g49210 LOC_Os01g33030 LOC_Os01g27730 LOC_Os01g57910 LOC_Os02g26850 LOC_Os01g43020 More.. |
| Downstream Genes | LOC_Os07g25440 LOC_Os08g23730 LOC_Os11g07500 LOC_Os09g19560 LOC_Os12g07300 LOC_Os12g29660 LOC_Os06g03780 LOC_Os06g30320 LOC_Os09g37860 LOC_Os06g09570 LOC_Os05g48422 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53770.1 |
| Rice Genome Annotation | LOC_Os04g53770.1 |
| Ricechip | LOC_Os04g53770.1 |
| KEGG | osa:4337094 dosa:Os04t0630000-01 |
| Entrez-Gene | 4337094 |