RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g56640.1 View Network Show in Genome Browser |
| Other Names | Os04g0661800 |
| Description | mediator of RNA polymerase II transcription subunit 7, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33774412-33777293 Nucleotide Length: 531 |
| Protein-coding | LOC_Os04g56640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g53960 LOC_Os01g32750 LOC_Os01g12880 LOC_Os01g51380 LOC_Os01g59730 LOC_Os01g68950 LOC_Os01g68940 LOC_Os03g56800 LOC_Os01g54870 LOC_Os01g47660 LOC_Os01g16890 More.. |
| Downstream Genes | LOC_Os09g35920 LOC_Os06g11370 LOC_Os10g41450 LOC_Os07g07020 LOC_Os10g42950 LOC_Os09g26180 LOC_Os09g02284 LOC_Os10g28040 LOC_Os07g24350 LOC_Os06g37180 LOC_Os05g41110 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g56640.1 |
| Rice Genome Annotation | LOC_Os04g56640.1 |
| Ricechip | LOC_Os04g56640.1 |
| KEGG | osa:4337290 dosa:Os04t0661800-01 |
| Entrez-Gene | 4337290 |