RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
---|---|
Locus Name | LOC_Os04g57440.1 View Network Show in Genome Browser |
Other Names | Os04g0670200,Os04g0670150 |
Description | oryzain beta chain precursor, putative, expressed |
Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 34172494-34176732 Nucleotide Length: 1401 |
Protein-coding | LOC_Os04g57440 |
Gene Ontology Classification | ||||
---|---|---|---|---|
GO | Name | Type | Code | |
GO:0008152 | metabolic process | Biological Process | IEA | |
GO:0008152 | metabolic process | Biological Process | IEA | |
GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
GO:0006950 | response to stress | Biological Process | IEA | |
GO:0006950 | response to stress | Biological Process | IEA | |
GO:0016787 | hydrolase activity | Molecular Function | IEA | |
GO:0016787 | hydrolase activity | Molecular Function | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0005773 | vacuole | Cellular Component | IEA | |
GO:0005773 | vacuole | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
---|---|
Upstream Genes | LOC_Os02g07490 LOC_Os03g18454 LOC_Os01g44950 LOC_Os04g51910 LOC_Os02g19150 LOC_Os03g18380 LOC_Os03g02970 LOC_Os04g55720 LOC_Os02g53860 LOC_Os03g34300 LOC_Os03g04770 More.. |
Downstream Genes | LOC_Os05g24550 LOC_Os08g12820 LOC_Os06g45590 LOC_Os09g26880 LOC_Os05g49150 LOC_Os08g13320 LOC_Os07g09060 LOC_Os06g02144 LOC_Os10g08550 LOC_Os06g21380 LOC_Os07g38970 More.. |
Pathways | |
---|---|
KEGG Pathways | rn00592 rn01100 rn00564 |
Metacyc Pathways | PWY-735 LIPASYN-PWY |
Database Links | |
---|---|
Gramene | LOC_Os04g57440.1 |
Rice Genome Annotation | LOC_Os04g57440.1 |
Ricechip | LOC_Os04g57440.1 |
KEGG | osa:4337351 dosa:Os04t0670200-02dosa:Os04t0670150-00 |
Entrez-Gene | 4337351 |