RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g05860.1 View Network Show in Genome Browser |
| Other Names | Os05g0151000 |
| Description | retrotransposon protein, putative, unclassified, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2934491-2944384 Nucleotide Length: 5616 |
| Protein-coding | LOC_Os05g05860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| IEA | ||||
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44484 LOC_Os01g59140 LOC_Os03g01230 LOC_Os02g53230 LOC_Os03g38960 LOC_Os02g02510 LOC_Os04g54840 LOC_Os03g28960 LOC_Os01g56550 LOC_Os04g16820 LOC_Os03g60130 More.. |
| Downstream Genes | LOC_Os09g02284 LOC_Os07g27930 LOC_Os07g07610 LOC_Os10g10990 LOC_Os05g33240 LOC_Os12g37370 LOC_Os08g07480 LOC_Os10g35290 LOC_Os11g29190 LOC_Os08g44450 LOC_Os11g08940 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 osa-miR408-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn00240 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g05860.1 |
| Rice Genome Annotation | LOC_Os05g05860.1 |
| Ricechip | LOC_Os05g05860.1 |
| KEGG | osa:4337831 dosa:Os05t0151000-00 |
| Entrez-Gene | 4337831 |