RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g27940.1 View Network Show in Genome Browser |
| Other Names | Os05g0346300 |
| Description | 40S ribosomal protein S7, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 16306507-16310548 Nucleotide Length: 579 |
| Protein-coding | LOC_Os05g27940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g27760 LOC_Os03g22180 LOC_Os01g49290 LOC_Os01g64090 LOC_Os04g50990 LOC_Os01g59990 LOC_Os02g21660 LOC_Os04g28180 LOC_Os03g59310 LOC_Os02g47140 LOC_Os01g19840 More.. |
| Downstream Genes | LOC_Os07g10720 LOC_Os12g38000 LOC_Os05g30530 LOC_Os09g31180 LOC_Os12g03090 LOC_Os11g03400 LOC_Os05g40820 LOC_Os07g47780 LOC_Os07g42950 LOC_Os05g28750 LOC_Os11g29190 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2100-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g27940.1 |
| Rice Genome Annotation | LOC_Os05g27940.1 |
| Ricechip | LOC_Os05g27940.1 |
| KEGG | osa:4338485 dosa:Os05t0346300-01 |
| Entrez-Gene | 4338485 |