RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39240.1 View Network Show in Genome Browser |
| Other Names | Os05g0468700 |
| Description | ammonium transporter protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23009214-23013433 Nucleotide Length: 1461 |
| Protein-coding | LOC_Os05g39240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g45170 LOC_Os01g27630 LOC_Os02g04810 LOC_Os05g01310 LOC_Os01g27390 LOC_Os05g38150 LOC_Os01g55830 LOC_Os01g27360 LOC_Os01g27340 LOC_Os01g27260 LOC_Os01g27380 More.. |
| Downstream Genes | LOC_Os10g30090 LOC_Os12g42850 LOC_Os08g31460 LOC_Os07g42600 LOC_Os06g46310 LOC_Os06g48950 LOC_Os11g03430 LOC_Os12g03130 LOC_Os09g35790 LOC_Os08g43334 LOC_Os10g11354 More.. |
| Reference | |
|---|---|
| PubMed | 22531935 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39240.1 |
| Rice Genome Annotation | LOC_Os05g39240.1 |
| Ricechip | LOC_Os05g39240.1 |
| KEGG | osa:4339064 dosa:Os05t0468700-01 |
| Entrez-Gene | 4339064 |