RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39310.1 View Network Show in Genome Browser |
| Other Names | Os05g0469600 |
| Description | thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23058937-23061264 Nucleotide Length: 1818 |
| Protein-coding | LOC_Os05g39310 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18220 LOC_Os04g58110 LOC_Os03g56460 LOC_Os02g38920 LOC_Os03g45920 LOC_Os04g02820 LOC_Os02g32030 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os01g32080 More.. |
| Downstream Genes | LOC_Os05g39320 LOC_Os06g14740 LOC_Os07g49250 LOC_Os06g14510 LOC_Os09g30418 LOC_Os09g30412 LOC_Os08g39140 LOC_Os07g08330 LOC_Os09g20820 LOC_Os12g25710 LOC_Os11g14220 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn01110 rn00010 rn01100 rn00290 rn00660 rn01210 |
| Metacyc Pathways | PWY-5057 PWY-5076 PWY-3801 PWY-6333 PWY-6330 PWY3O-440 PWY-5768 PWY-5486 ILEUSYN-PWY VALSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39310.1 |
| Rice Genome Annotation | LOC_Os05g39310.1 |
| Ricechip | LOC_Os05g39310.1 |
| KEGG | osa:4339066 dosa:Os05t0469600-01 |
| Entrez-Gene | 4339066 |