RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g46230.1 View Network Show in Genome Browser |
| Other Names | Os05g0539700 |
| Description | NAP domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 26808002-26812530 Nucleotide Length: 1095 |
| Protein-coding | LOC_Os05g46230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18570 LOC_Os03g18580 LOC_Os05g27940 LOC_Os04g50990 LOC_Os03g27260 LOC_Os02g47140 LOC_Os03g53190 LOC_Os04g39700 LOC_Os01g62230 LOC_Os02g37862 LOC_Os02g27760 More.. |
| Downstream Genes | LOC_Os07g42950 LOC_Os08g33100 LOC_Os07g36140 LOC_Os12g34510 LOC_Os08g44450 LOC_Os08g44380 LOC_Os08g02410 LOC_Os07g10720 LOC_Os08g02400 LOC_Os12g03090 LOC_Os08g09940 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g46230.1 |
| Rice Genome Annotation | LOC_Os05g46230.1 |
| Ricechip | LOC_Os05g46230.1 |
| KEGG | osa:4339460 dosa:Os05t0539700-01 |
| Entrez-Gene | 4339460 |