RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49230.1 View Network Show in Genome Browser |
| Other Names | Os05g0567400 |
| Description | ribosomal RNA large subunit methyltransferase J, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28245031-28249579 Nucleotide Length: 2460 |
| Protein-coding | LOC_Os05g49230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g01990 LOC_Os03g22350 LOC_Os04g58830 LOC_Os05g48422 LOC_Os01g68310 LOC_Os01g69970 LOC_Os01g43150 LOC_Os01g39260 LOC_Os01g39250 LOC_Os01g40820 LOC_Os03g22320 More.. |
| Downstream Genes | LOC_Os12g31840 LOC_Os07g33340 LOC_Os11g01420 LOC_Os12g01430 LOC_Os06g09570 LOC_Os07g01920 LOC_Os10g36860 LOC_Os10g30580 LOC_Os07g20580 LOC_Os08g32090 LOC_Os06g51029 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110 |
| Metacyc Pathways | PWY-4021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49230.1 |
| Rice Genome Annotation | LOC_Os05g49230.1 |
| Ricechip | LOC_Os05g49230.1 |
| KEGG | osa:4339641 dosa:Os05t0567400-01 |
| Entrez-Gene | 4339641 |