RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49520.1 View Network Show in Genome Browser |
| Other Names | Os05g0570400 |
| Description | CTP synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28392189-28397924 Nucleotide Length: 1824 |
| Protein-coding | LOC_Os05g49520 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15950 LOC_Os01g43020 LOC_Os01g38970 LOC_Os03g50380 LOC_Os03g14450 LOC_Os03g15120 LOC_Os03g18410 LOC_Os03g50880 LOC_Os03g52470 LOC_Os01g46570 LOC_Os03g22320 More.. |
| Downstream Genes | LOC_Os12g10784 LOC_Os12g36950 LOC_Os07g25440 LOC_Os09g20820 LOC_Os08g23730 LOC_Os06g04510 LOC_Os10g08550 LOC_Os06g43690 LOC_Os05g49770 LOC_Os12g03822 LOC_Os11g03990 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR529b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 |
| Metacyc Pathways | PWY0-162 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49520.1 |
| Rice Genome Annotation | LOC_Os05g49520.1 |
| Ricechip | LOC_Os05g49520.1 |
| KEGG | dosa:Os05t0570400-00 |