RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49770.1 View Network Show in Genome Browser |
| Other Names | Os05g0573300 |
| Description | CTP synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28551310-28557309 Nucleotide Length: 1827 |
| Protein-coding | LOC_Os05g49770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43020 LOC_Os03g15950 LOC_Os03g50380 LOC_Os03g18410 LOC_Os03g52470 LOC_Os03g22320 LOC_Os04g43140 LOC_Os03g49210 LOC_Os04g50660 LOC_Os05g02400 LOC_Os02g26850 More.. |
| Downstream Genes | LOC_Os07g25440 LOC_Os12g36950 LOC_Os06g43690 LOC_Os12g03822 LOC_Os11g03990 LOC_Os12g10784 LOC_Os05g51700 LOC_Os10g35280 LOC_Os06g09570 LOC_Os07g01920 LOC_Os08g23730 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 |
| Metacyc Pathways | PWY0-162 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49770.1 |
| Rice Genome Annotation | LOC_Os05g49770.1 |
| Ricechip | LOC_Os05g49770.1 |
| KEGG | osa:4339675 dosa:Os05t0573300-01 |
| Entrez-Gene | 4339675 |