RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g51500.1 View Network Show in Genome Browser |
| Other Names | Os05g0592600 |
| Description | eukaryotic translation initiation factor 5B, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29528559-29534682 Nucleotide Length: 3621 |
| Protein-coding | LOC_Os05g51500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g25450 LOC_Os05g01750 LOC_Os04g51630 LOC_Os03g18570 LOC_Os05g27940 LOC_Os03g18580 LOC_Os04g48700 LOC_Os02g55940 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 More.. |
| Downstream Genes | LOC_Os07g44190 LOC_Os06g04610 LOC_Os07g03230 LOC_Os11g38600 LOC_Os07g08330 LOC_Os08g13690 LOC_Os12g41400 LOC_Os06g07896 LOC_Os12g07740 LOC_Os07g10250 LOC_Os07g07310 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g51500.1 |
| Rice Genome Annotation | LOC_Os05g51500.1 |
| Ricechip | LOC_Os05g51500.1 |
| KEGG | osa:4339796 dosa:Os05t0592600-01 |
| Entrez-Gene | 4339796 |