RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os06g16390.1 View Network Show in Genome Browser |
Other Names | Os06g0275500 |
Description | SET domain containing protein, expressed |
Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 9353713-9362101 Nucleotide Length: 2691 |
Protein-coding | LOC_Os06g16390 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
GO:0008150 | biological_process | Biological Process | IEA | |
GO:0009058 | biosynthetic process | Biological Process | IEA | |
GO:0016043 | cellular component organization | Biological Process | IEA | |
GO:0007275 | multicellular organismal development | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0009791 | post-embryonic development | Biological Process | IEA | |
GO:0006464 | protein modification process | Biological Process | IEA | |
GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
GO:0000003 | reproduction | Biological Process | IEA | |
GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
GO:0006950 | response to stress | Biological Process | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0003723 | RNA binding | Molecular Function | IEA | |
GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
GO:0005634 | nucleus | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os05g46270 LOC_Os02g47150 LOC_Os04g08034 LOC_Os06g03676 LOC_Os05g50980 LOC_Os04g53700 LOC_Os02g50100 LOC_Os01g74500 LOC_Os05g14590 LOC_Os03g07260 LOC_Os02g03030 More.. |
Downstream Genes | LOC_Os08g04270 LOC_Os08g04290 LOC_Os06g38470 LOC_Os11g08660 LOC_Os07g32390 LOC_Os12g13460 LOC_Os08g14660 LOC_Os08g10470 LOC_Os07g28840 LOC_Os10g30640 LOC_Os12g37590 More.. |
Reference | |
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PubMed | 19825651 |
Database Links | |
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Gramene | LOC_Os06g16390.1 |
Rice Genome Annotation | LOC_Os06g16390.1 |
Ricechip | LOC_Os06g16390.1 |
KEGG | osa:4340748 dosa:Os06t0275500-01 |
Entrez-Gene | 4340748 |