RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g49520.1 View Network Show in Genome Browser |
| Other Names | Os07g0695800 |
| Description | 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 29656860-29662509 Nucleotide Length: 3027 |
| Protein-coding | LOC_Os07g49520 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g32330 LOC_Os02g31040 LOC_Os01g22520 LOC_Os05g06750 LOC_Os07g04240 LOC_Os02g40830 LOC_Os07g38970 LOC_Os06g04270 LOC_Os02g50620 LOC_Os04g39700 LOC_Os02g37862 More.. |
| Downstream Genes | LOC_Os08g02640 LOC_Os09g20440 LOC_Os09g33500 LOC_Os08g42410 LOC_Os11g47330 LOC_Os11g47120 LOC_Os12g37870 LOC_Os12g42230 LOC_Os10g42840 LOC_Os08g06430 LOC_Os12g08260 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00310 rn01100 rn00020 rn01120 rn00380 |
| Metacyc Pathways | PWY-5084 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g49520.1 |
| Rice Genome Annotation | LOC_Os07g49520.1 |
| Ricechip | LOC_Os07g49520.1 |
| KEGG | osa:4344403 dosa:Os07t0695800-01 |
| Entrez-Gene | 4344403 |