RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g05840.1 View Network Show in Genome Browser |
| Other Names | Os08g0154600 |
| Description | DNA topoisomerase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 3136744-3142891 Nucleotide Length: 2751 |
| Protein-coding | LOC_Os08g05840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003682 | chromatin binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47150 LOC_Os04g25550 LOC_Os03g55570 LOC_Os07g16950 LOC_Os04g52960 LOC_Os03g06900 LOC_Os06g31210 LOC_Os07g02350 LOC_Os04g54330 LOC_Os05g08970 LOC_Os01g08970 More.. |
| Downstream Genes | LOC_Os10g26050 LOC_Os12g42150 LOC_Os08g31240 LOC_Os12g26030 LOC_Os09g34910 LOC_Os08g32100 LOC_Os11g48090 LOC_Os10g41520 LOC_Os08g09350 LOC_Os10g39120 LOC_Os08g06070 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g05840.1 |
| Rice Genome Annotation | LOC_Os08g05840.1 |
| Ricechip | LOC_Os08g05840.1 |
| KEGG | osa:4344685 dosa:Os08t0154600-01 |
| Entrez-Gene | 4344685 |