RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39500.1 View Network Show in Genome Browser |
| Other Names | Os08g0505300 |
| Description | 60S ribosomal protein L31, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24992919-24994506 Nucleotide Length: 369 |
| Protein-coding | LOC_Os08g39500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59990 LOC_Os05g40820 LOC_Os02g14059 LOC_Os02g27760 LOC_Os07g10720 LOC_Os04g50990 LOC_Os02g47140 LOC_Os07g10660 LOC_Os05g39960 LOC_Os08g02410 LOC_Os03g60400 More.. |
| Downstream Genes | LOC_Os09g24690 LOC_Os10g32920 LOC_Os09g32976 LOC_Os08g44480 LOC_Os09g31180 LOC_Os11g05562 LOC_Os09g39540 LOC_Os11g04070 LOC_Os12g03880 LOC_Os10g41470 LOC_Os09g08430 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5532 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39500.1 |
| Rice Genome Annotation | LOC_Os08g39500.1 |
| Ricechip | LOC_Os08g39500.1 |
| KEGG | osa:4345976 dosa:Os08t0505300-00 |
| Entrez-Gene | 4345976 |