RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g27270.1 View Network Show in Genome Browser |
| Other Names | Os09g0445100 |
| Description | ribosomal RNA large subunit methyltransferase J, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 16580416-16580892 Nucleotide Length: 477 |
| Protein-coding | LOC_Os09g27270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43150 LOC_Os01g39260 LOC_Os01g39250 LOC_Os01g40820 LOC_Os06g51029 LOC_Os07g42632 LOC_Os06g45820 LOC_Os02g54340 LOC_Os06g09290 LOC_Os06g12370 LOC_Os02g21970 More.. |
| Downstream Genes | LOC_Os10g36860 LOC_Os10g30580 LOC_Os10g22700 LOC_Os10g37500 LOC_Os11g43970 LOC_Os09g39034 LOC_Os09g36450 LOC_Os09g34010 LOC_Os12g28460 LOC_Os09g27340 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g27270.1 |
| Rice Genome Annotation | LOC_Os09g27270.1 |
| Ricechip | LOC_Os09g27270.1 |
| KEGG | dosa:Os09t0445100-00 |